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35 downloads
License: Free
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. High-quality interactive visualizations with just a few clicksReliable and easy data analysis, no coding required!Support for live data and data extraction from plotsDrag & drop import and extensive e...
This project was last updated September 28, 2022
16 downloads
License: Free
ggplot2 is a system written in R for declaratively creating graphics. It is based on The Grammar of Graphics, which focuses on following a layered approach to describe and construct visualizations or graphics in a structured manner. With ggplot2 you simply provide the data, tell ggplot2 how to map variables to aestheti...
This project was last updated September 26, 2022
13 downloads
License: Free
MitoSAlt is a pipeline to identify large deletions and duplications in human and mouse mitochondrial genomes from next generation whole genome/exome sequencing data. The pipeline is capable of analyzing any circular genome in principle, as long as a proper configuration file is provided. Clinical SequencingMitochondri...
This project was last updated September 29, 2022
5 downloads
License: Free
activAnalyzer is a Shinny app that was developed to analyze daily physical behavior data recorded at the hip in adults using an ActiGraph accelerometer (.agd files). Once analysis is completed, the app allows to export results (summarized by day and averaged over valid days) to .csv files and to generate a report of th...
This project was last updated September 22, 2022
3 downloads
License: Free
Liquid chromatography–high resolution mass spectrometry (LC-HRMS) is the most popular platform for untargeted metabolomics methods, but annotating LC-HRMS data is a long-standing bottleneck that we are facing since years ago in metabolomics research. A wide variety of methods have been established to deal with the anno...
This project was last updated September 29, 2022
3 downloads
License: Free
Viral subtypes or clades represent clusters among isolates from the global population of a defined species. Subtypification is relevant for studies on virus epidemiology, evolution and pathogenesis. In this sense, Covidex was developed as an open source alignment-free machine learning subtyping tool. It is a shiny app ...
This project was last updated September 23, 2022
1 downloads
License: Free
QuantifyPoly(A) - a tool for quantification of poly(A) sites from 3' end sequencing data. [1] QuantifyPoly(A) user manual Please visit the Wiki page of this website. [2] QuantifyPoly(A) Q&A For Q&A, please visit the Blog page of this website. [3] QuantifyPoly(A) bug report You can report a bug as a Ticket...
This project was last updated September 29, 2022
0 download
License: Free
KidneyExplorer enables you to interactively survey kidney proteomics datasets from different kidney disease models. Here you can download the corresponding SQL database dumps. The original website for the shiny app is: https://kidneyapp.shinyapps.io/kidneyorganoids/ Kidney disease proteomics data visualization ...
This project was last updated September 28, 2022
0 download
License: Free
Semi-automated workflow to quantify root bending and elongation for scanned pictures of Arabidopsis thaliana...
This project was last updated September 28, 2022
0 download
License: Free
This is a collection of scripts and instructions on how to analyzing amplicon sequence data (i.e., 16S, ITS2, & other marker genes). I created this workflow to create a consistent set of methods for analyzing amplicon sequence data, from when you first receive the sequence data to statistical analyses & data vi...
This project was last updated September 22, 2022
0 download
License: Free
Greenhouse Gas CalculatorClimate ChangeRegenerative AgricultureSoil Health ...
This project was last updated September 25, 2022
0 download
License: Free
Python project with goal to provide FOSS library to extract, analyse and visualise data in a 3D fashion. The instance will connect to a data source, ods sheet, csv, sql DB, pyodbc the instance will analyse and/or transform the data to be presented to the visualisation functionality the instance will visualise the dat...
This project was last updated September 27, 2022
0 download
License: Free
OmicSelector is an environment, Docker-based web application, and R package for biomarker signature selection (feature selection) from high-throughput experiments and others. It was initially developed for miRNA-seq (small RNA, smRNA-seq; hence the name was miRNAselector), RNA-seq and qPCR, but can be applied for every...
This project was last updated September 29, 2022
0 download
License: Free
YA BASTA! is a Python/R application for Lyrics Web Scraper and Text Analysis. Web scraping is developed in Python, text analysis in R as Python subprocesses. YA BASTA! is only tested on windows OS. To run YA BASTA! just type on window command prompt: python.exe yabasta.py Lyrics Web ScraperLexical Correspondence Anal...
This project was last updated September 29, 2022
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