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PB-sQF_BacterialTyping

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Project In PB-sQF_BacterialTyping

Probability Binning - signature Quadratic Form, PB-sQF, types unknown sequence to one of the 628 bacterial library genomes which gives the smallest test statistics thus most similar library strain.
The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https://sourceforge.net/projects/kanalyze/).
The download included the library index, the library name and sample unknowns.
  • Calculating test statistics between library and unknown k-mer frequency
  • Bacterial sequence typing
  • Windows
  • Mac

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License

Free

Latest update

2022-04-01

Platform

MATLAB

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